Report_manager.hpp

#ifndef _REPORT_MANAGER_
#define _REPORT_MANAGER_

#include "Mdp_toolbox.hpp"
#include "Statistical_toolbox.hpp"

class Report_manager{
  Mdp_toolbox mdp_toolbox;
  Statistical_toolbox statistical_toolbox;
  std::string separator = "\t";
  
public:
  //first argument is database location, the second argument is if we want to remove the endpoint that have more than 10 characters
  Report_manager(std::string, bool, std::string);
  
  //mdp_toolbox reports
  std::stringstream number_of_aminoacids_per_coordinate(void);
  std::stringstream aminoacids_per_coordinate(void);
  std::stringstream number_k_discriminant_motifs(int k);
  std::stringstream k_discriminant_motifs_pair(int k);
  std::stringstream motif_discriminant_positions_alignval(void);
  std::stringstream number_pairs_motifs_with_k_discriminant_positions(void);

  //statistical_toolbox reports, necessary for python scripts
  std::stringstream empiric_motif_probabilities();
  std::stringstream all_lenghts_accumulated_probabilities();
};

#endif